VTK_PATH=sbmt/build/dist/internal/linux64/sbmt/lib/linux64
JAVA=/disks/d0364/software/jdk1.8.0_51/jre/bin/java 
JAVA_LIB=/disks/d0364/software/jdk1.8.0_51/jre/lib/amd64
export LD_LIBRARY_PATH=$JAVA:JAVA/xawt:$VTK_PATH:$VTK_PATH/bin:$LD_LIBRARY_PATH

rm -rf tree
mkdir tree

CLASSPATH="sbmt/build/dist/internal/linux64/sbmt/lib/altwg-java-tools.jar:sbmt/build/dist/internal/linux64/sbmt/lib/commons-io-2.0.jar:sbmt/build/dist/internal/linux64/sbmt/lib/commons-math3-3.2.jar:sbmt/build/dist/internal/linux64/sbmt/lib/commons-pool-1.5.4.jar:sbmt/build/dist/internal/linux64/sbmt/lib/core-0.26.jar:sbmt/build/dist/internal/linux64/sbmt/lib/GeographicLib-Java-1.44.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gluegen-rt.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gluegen-rt-natives-linux-amd64.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-api-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-coverage-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-cql-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-data-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-epsg-hsql-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-main-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-metadata-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-opengis-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-referencing-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-render-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-shapefile-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/gt-swing-15.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/guava-13.0.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/hsqldb-2.3.0.jar:sbmt/build/dist/internal/linux64/sbmt/lib/imageio-ext-geocore-1.1.15.jar:sbmt/build/dist/internal/linux64/sbmt/lib/imageio-ext-streams-1.1.15.jar:sbmt/build/dist/internal/linux64/sbmt/lib/imageio-ext-tiff-1.1.15.jar:sbmt/build/dist/internal/linux64/sbmt/lib/imageio-ext-utilities-1.1.15.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jai_codec-1.1.3.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jai_core-1.1.3.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jai_imageio-1.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/Jama-1.0.2.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jcommon-1.0.16.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jdom-1.1.3.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jfreechart-1.0.13.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jgoodies-common-1.1.1.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jgoodies-looks-2.4.0.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jgridshift-1.0.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jide-oss-3.6.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/joda-time-1.6.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jogl-all.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jogl-all-natives-linux-amd64.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jsr-275-1.0-beta-2.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-affine-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-algebra-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-bandcombine-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-bandmerge-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-bandselect-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-binarize-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-border-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-buffer-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-classifier-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-colorconvert-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-colorindexer-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-crop-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-errordiffusion-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-format-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-imagefunction-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-iterators-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-lookup-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-mosaic-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-nullop-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-orderdither-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-piecewise-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-rescale-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-rlookup-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jts-1.13.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-scale-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-stats-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-translate-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-utilities-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-utils-1.4.0.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-vectorbin-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-warp-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-zonal-1.0.9.jar:sbmt/build/dist/internal/linux64/sbmt/lib/jt-zonalstats-1.4.0.jar:sbmt/build/dist/internal/linux64/sbmt/lib/miglayout-3.7.1-swing.jar:sbmt/build/dist/internal/linux64/sbmt/lib/mysql-connector-java-5.1.10-bin.jar:sbmt/build/dist/internal/linux64/sbmt/lib/near.jar:sbmt/build/dist/internal/linux64/sbmt/lib/nom-tam-fits-1.13.1m0.jar:sbmt/build/dist/internal/linux64/sbmt/lib/quaqua-7.3.4-filechooser-only.jar:sbmt/build/dist/internal/linux64/sbmt/lib/quaqua-7.3.4.jar:sbmt/build/dist/internal/linux64/sbmt/lib/RelativeLayout-v1.0.jar:sbmt/build/dist/internal/linux64/sbmt/lib/saavtk.jar:sbmt/build/dist/internal/linux64/sbmt/lib/spice-N0065.jar:sbmt/build/dist/internal/linux64/sbmt/lib/vtk-6.3.jar"
ENTRY_POINT=edu.jhuapl.sbmt.lidar.hyperoctree.mola.MolaFSHyperTreeGenerator
ARGS="inputDirectories tree 5 32 75m45"

time $JAVA -Djava.library.path=$VTK_PATH:$JAVA_LIB -cp $CLASSPATH $ENTRY_POINT $ARGS